What tewas is for | A synthetic array with planted loci | The linear scan: tewas_v16() | The pieces, one at a time | A declared design: tewas_frame() | Bioconductor classes: SummarizedExperiment in, GRanges out | The report: tewas_report() | Target genes: tewas_genes() | The standing of each arm | Session information

What is served | Local mode | Provenance | Session info

The problem | One call | The two columns that matter | Every target gene, one row per pair | Abstention is deliberate | Checking a result that looks one-sided | The limitation that governs everything | Session info

The adapter in one example | The recipes | Does the pipeline choice change the answer? A real-data check | Session info

The problem this package exists to solve | What a direction-blind test sees | The alignment step | Running the three lenses | Which lens fires is itself a result | What DMSA does not do | Moving to real data